My post was a little misleading. What's happening is the MIDI clips in question don't start at measure 1. One starts at measure 9, but in the Edit window it shows the beginning of the clip at measure 1, which is out of sync with the main timeline, which is confusing to me.
In other words, the Edit windows start measure 1 at the beginning of the open clip instead of the beginning of the song. It would be less confusing if each window was in sync with the main timeline.
Also, if I click on measure 12 in the main timeline to set the Now Time, the Edit windows don't follow that. It would help in isolating notes that need editing easier if they did.
Mixcraft 8.1 Pro Studio (418), Windows 10 Alienware laptop, Windows 10 64 bit, Behringer UFX1204USB mixer/interface.